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GoekeLab
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proActiv
Estimation of Promoter Activity from RNA-Seq data
https://goekelab.github.io/proActiv/
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Vignette and READ.ME
#18
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jleechung
closed
4 years ago
jleechung
commented
4 years ago
include vignette - sections include:
proActiv workflow
identifying alternate promoter usage with DEXSeq
visualization of:
alternate promoter usage
promoter categories (proportion, by position)
tSNE
update READ.ME - sections include:
quick start
creating promoter annotation
estimating promoter activity
further reduce promoter annotation
store promoter id as integer
add mm10 and mm9 promoter annotations
modify proActiv to accept
condition
argument
allows summarization of results by condition
condition
argument