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GoekeLab / proActiv

Estimation of Promoter Activity from RNA-Seq data
https://goekelab.github.io/proActiv/
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getAlternativePromoters (Bioconductor version dont have it) #26

Closed ashokpatowary closed 2 years ago

ashokpatowary commented 3 years ago

Hi

I am interested in getAlternativePromoters in my dataset. The bioconductor version is not having this function; so I installed from github. However, while running I cant see any alternative promoter. I have relaxed the condition to promoterFC=0.1, geneFC=10, maxPval=0.9; then also no results.

Does, getAlternativePromoters need replicates to call it?

Thanks

jleechung commented 3 years ago

Hi @ashokpatowary thank you for your interest in proActiv! The version of proActiv with the latest release of Bioconductor (3.13) should have this function implemented. Of course you can also install the development version for latest updates. Would you mind posting this question to the Bioconductor forum? https://support.bioconductor.org/ We will respond there so others can easily find this.