Open jonathangoeke opened 4 years ago
BAM file usage implemented using GenomicAlignments
package with readGAlignments
and summarizeJunctions
functions.
Future work to be done includes reading/extracting only the reads that are needed to infer junction usage instead of the whole BAM file.
Hi: I'm trying to estimate promoter activity from bam files, and my question is that I use the given bam file in the proactiv package, but I did not get the result like the workflow.
Implement an option to estimate promoter activity from bam files (currently proActiv requires the junction files from TopHat2 or STAR)