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GoekeLab / proActiv

Estimation of Promoter Activity from RNA-Seq data
https://goekelab.github.io/proActiv/
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cannot find extdata/testdata/bam #39

Closed houruiyan closed 2 years ago

houruiyan commented 2 years ago

Hi, thank your teams' great work.

I am a newbie. I want to try your package by using example bam file. However, I cannot find extdata/testdata/bam? Could you help me? Thank you.

Best regards, Ruiyan

jleechung commented 2 years ago

Hi,

The bam files are in the extdata/testdata/bam directory. You can obtain their paths on your system with the following:

> bam_path <- system.file('extdata/testdata/bam', package = 'proActiv')
> bam_path
[1] "C:/Users/joseph/OneDrive/Documents/R/win-library/4.1/proActiv/extdata/testdata/bam"

> list.files(bam_path, full.names = TRUE)
[1] "C:/Users/joseph/OneDrive/Documents/R/win-library/4.1/proActiv/extdata/testdata/bam/SGNEx_A549_Illumina_replicate1-run1_genome_subset.bam"
[2] "C:/Users/joseph/OneDrive/Documents/R/win-library/4.1/proActiv/extdata/testdata/bam/SGNEx_MCF7_Illumina_replicate2-run1_genome_subset.bam"
houruiyan commented 2 years ago

ok , thank you very much!