calculatePromoterReadCounts were not running

GoekeLab / proActiv

Estimation of Promoter Activity from RNA-Seq data

https://goekelab.github.io/proActiv/

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calculatePromoterReadCounts were not running #44

Open GuangyaoL opened 1 year ago

GuangyaoL commented 1 year ago

hi~ proActiv::calculatePromoterReadCounts(files=files, promoterAnnotation = promoterAnnotion.genecode.dm6.subset,fileType="star")

we counted promoters count by using this function and found that ···Error: 'calculatePromoterReadCounts' is not an exported object from 'namespace:proActiv' ···

jleechung commented 1 year ago

Hi @GuangyaoL,

What version of proActiv are you running?

calculatePromoterReadCounts has been deprecated in the current version of proActiv. Please see the workflow for the latest version here, which runs proActiv in a single command.

Alternatively, you can use the original implementation of proActiv, by downloading this release.