What is the mean of names(genomeStyles()) ?

[houruiyan]

Hi , Thank you very much for this greate package.

I want to use it to detect the promoter activity in chicken. However, when I do annotation, there is an error as following.

library(proActiv)
## From GTF file path
gtf.file <- '/mnt/ruiyanhou/nfs_share2/RNA_seq_organ_species/chicken/ref_files/galGal4.ensGene.gtf'

promoterAnnotation.gencode.v34.subset <- preparePromoterAnnotation(file = gtf.file,
                                                                   species = 'Gallus_gallus')

I don't know the reason. Do your package support any species?

I found the illustration about the species.

So your package just support these species mentioned above?

Hope to get your reply.

Thank you in advance!

[jleechung]

Hi @houruiyan, proActiv should work for the species specified above. For non-standard species some preprocessing of the gene annotations may be necessary but this varies on a case-by-case basis. Please see #48 as an example.

[houruiyan]

Thank you! Now it solved!