GoekeLab / proActiv

Estimation of Promoter Activity from RNA-Seq data
https://goekelab.github.io/proActiv/
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Does getAlternativePromoters function work properly? #52

Closed Tianle-Li closed 5 months ago

Tianle-Li commented 6 months ago

Hello, thank you for your excellent work!

When I run the getAlternativePromoters function in version 1.12.0, it keeps showing: Fitting absolute promoter activity to condition Fitting relative promoter activity to condition No alternative promoters detected with current parameters Consider relaxing thresholds

How do you suggest solving it? (Attempted to relax the threshold but still remains so)