Open jackwgoodall opened 1 month ago
Hi @jackwgoodall ,
thank you for using SG-NEx data resource and for pointing out that the description is unclear. For the core datasets, we have generated 7 core cell lines, and we have also sequenced patient-derived cell lines (which we refer as tissue samples). Then for core cell lines, we have sequenced them in multiple replicates using different sequencing protocols. For patient-derived cell lines, however, we sequenced with direct RNA only and not in replicates. For your information, here are the patient-derived cell lines: NCC24, IM95 and N082, N122, and N104.
Hope this clarifies your questions and let me know if you have other questions! Thank you Warm regards, Ying
Thank you for this amazing resource. On the AWS landing page it sounds like there are tissue samples processed but I only seem able to find cell lines sequenced?
Apologies if this is just me missunderstanding either the data description or the file descriptions.