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GoekeLab / sg-nex-data

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
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Short-read data #9

Closed ezecalvo closed 2 years ago

ezecalvo commented 3 years ago

Hi,

I'm trying to understand which files belong to short-read seq data. Is it the ones that say "cDNA" or "cDNAStranded"? When looking at read lengths both types of files have reads longer than 300nt. So not sure about how to distinguish PCR-cDNA and short-read cDNA.

Thanks

jonathangoeke commented 3 years ago

Hi @ezecalvo all of these files are long read data. We plan to update the repository soon to include the links for the short read data.

savytskanatalia commented 3 years ago

Hello @jonathangoeke ! Any updates on the progress with update? We are also interested in short data for a small benchmark :)

SamBryce-Smith commented 2 years ago

Would also like to chime in and say I'd be very interested in the short read data being publicly available. Thanks for providing the long-read data already though!