Are the initial data-prep steps now in line with m6anet?

GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

https://xpore.readthedocs.io/

MIT License

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Are the initial data-prep steps now in line with m6anet? #114

Closed callumparr closed 2 years ago

callumparr commented 2 years ago

I recently updated xpore and rerunning the tool on my files. Is the data prep files now compatible with m6anet to run and get the actual m6A calls rather than differential modified sites.

yuukiiwa commented 2 years ago

Hi @callumparr,

The xpore dataprep outputs are not compatible with m6anet-run_inference, so you will have to run the m6anet-dataprep for detecting m6A sites with m6anet-run_inference. Thanks!

Best wishes, Yuk Kei

callumparr commented 2 years ago

Thank you