GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing
https://xpore.readthedocs.io/
MIT License
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Clarification on "Output table description" #134

Closed nicolechaumont closed 2 years ago

nicolechaumont commented 2 years ago

Hello,

Could you give me few details on the following issues

  1. diff_modratevs from the definition it looks that this value could be log2 ratio of condition1/ condition2. Is it the case ?

  2. The last column of the table in your doc is "mod_assignment". However, using diffmod 0.5.6 we have supplementary column "t-test". What is it corresponding to ?

  3. If we work on output table using the p-value in column 6 "pval_vs" to extract significant values do we have to correct the values for multitesting (BH or p-adjust )

Thank you for your help.

Nicole