yuukiiwa
commented
2 years ago Hi @ynren1020,
Currently, xpore diffmod is having trouble running with the --save_models parameters, so we would suggest you not include the --save_models parameters when running xpore diffmod as the --save_models does not affect downstream analyses, which only requires the diffmod.table.
Thanks!
Best wishes, Yuk Kei
Hello - I have a quick question seeking your suggestions. When I run diffmod module of xpore, I got an error message like this: File "/mambaforge/envs/xpore/lib/python3.10/site-packages/xpore/scripts/diffmod.py", line 63, in execute io.save_models_to_hdf5(models,out_paths['model_filepath']) File "/mambaforge/envs/xpore/lib/python3.10/site-packages/xpore/diffmod/io.py", line 118, in save_models_to_hdf5 model_file[idx].create_group(position) File "/mambaforge/envs/xpore/lib/python3.10/site-packages/h5py/_hl/group.py", line 66, in create_group gid = h5g.create(self.id, name, lcpl=lcpl, gcpl=gcpl) File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper File "h5py/h5g.pyx", line 166, in h5py.h5g.create ValueError: Unable to create group (bad symbol table node signature)
It seems that it is due to I add --save-models parameter when I run xpore-diffmod, does this error affect the diffmod analysis? The analysis is still running with this error.
Thanks,
Yanan