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GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing
https://xpore.readthedocs.io/
MIT License
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Regulate minimum coverage manually ？ #143

Closed Peng-Lingwei closed 11 months ago

Peng-Lingwei commented 2 years ago

Hello！ Thanks for such an excellent software, I have some doubts about diffmod.table. When I checked the Colum9 and Column10 of diffmod.table, I found that the minimum coverage is 15. I am not sure whether I can select the minimum coverage manually (I am trying to get a lower coverage), because I did not find the relative parameter. image

yuukiiwa commented 2 years ago

Hi @Peng-Lingwei,

You will have to add the following to your config.yml file:

criteria:
    readcount_min: <integer less than 15>

You can find more information about the config.yml file from here: https://xpore.readthedocs.io/en/latest/configuration.html

Thanks!

Best wishes, Yuk Kei