eventalign.txt.gz file as an input

GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

https://xpore.readthedocs.io/

MIT License

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eventalign.txt.gz file as an input #148

Open sunsetyerin opened 2 years ago

sunsetyerin commented 2 years ago

hi, I generated 2TB eventalign.txt using nanopolish as a result. Since it's nonsense storing it, I gzipped it and when I tried to apply xpore dataprep for the compressed eventalign.txt.gz, it couldn't read the file. Is there any way xpore can read compressed eventalign.txt? Thanks in advance.

yuukiiwa commented 2 years ago

Hi @sunsetyerin,

Thanks for the good suggestion!! We will try to incorporate the reading of compressed eventalign.txt files into the next release.

Best wishes, Yuk Kei