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GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing
https://xpore.readthedocs.io/
MIT License
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dRNA-Seq kit and FLO cell ID #154

Closed rezarahman12 closed 1 year ago

rezarahman12 commented 1 year ago

Hi there, Thank you for developing this immensely helpful tool for analysis of ONT dRNA-Seq data. I would appreciate knowing the sequencing kit and FLO cell ID used for the below data used in the xPore paper in Nature Biotechnology, which I need to run guppy for base calling. HEK293T-KO-rep 1 HEK293T-KO-rep 2 HEK293T-KO-rep 3 HEK293T-WT-rep 1 HEK293T-WT-rep 2 HEK293T-WT-rep 3

Thank you for your kind consideration. Kind regards Reza

yuukiiwa commented 1 year ago

Hi @rezarahman12,

Here are the information on the FLO cell ID and sequencing kit for the samples: HEK293T-KO-rep 1: FLO-MIN106D, SQK-RNA001 HEK293T-KO-rep 2: FLO-MIN106D, SQK-RNA002 HEK293T-KO-rep 3: FLO-MIN106D, SQK-RNA002 HEK293T-WT-rep 1: FLO-MIN106D, SQK-RNA001 HEK293T-WT-rep 2: FLO-MIN106D, SQK-RNA002 HEK293T-WT-rep 3: FLO-MIN106, SQK-RNA002

Thanks!

Best wishes, Yuk Kei

rezarahman12 commented 1 year ago

Thank you for your kind reply.