GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing
https://xpore.readthedocs.io/
MIT License
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fixing bug for Ensembl cDNA fasta #201

Closed yuukiiwa closed 7 months ago

yuukiiwa commented 7 months ago

The reference name would be like this.

>ENST00000290810 cdna chromosome:GRCh38:16:66802878:66830976:-1 gene:ENSG00000159593.15 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NAE1 description:NEDD8 activating enzyme E1 subunit 1 [Source:HGNC Symbol;Acc:HGNC:621]

The old cold will store the transcript id as ENST00000290810 cdna chromosome:GRCh38:16:66802878:66830976:-1 gene:ENSG00000159593, which was not able to use in the converting transcriptome locations to genome locations.