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GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing
https://xpore.readthedocs.io/
MIT License
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Performance Warning #208

Closed nickst85 closed 5 months ago

nickst85 commented 6 months ago

Hi,

Once I started to indexing my nanopolish eventalign output I got the following Performance Warning error:

.local/lib/python3.9/site-packages/xpore/scripts/dataprep.py:21: PerformanceWarning: indexing past lexsort depth may impact performance. pos_end += eventalign_result.loc[index]['line_length'].sum()

Do you know how I can overcome this error?

Thanks in advance,

N

yuukiiwa commented 5 months ago

Hi @nickst85.

This is a warning, not an error. It is normal to see this when running xpore dataprep.

Thanks!

Best wishes, Yuk Kei