Run wiith only one sample

GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

https://xpore.readthedocs.io/

MIT License

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Run wiith only one sample #230

Open Seongmin-Jang-1165 opened 3 weeks ago

Seongmin-Jang-1165 commented 3 weeks ago

hello

i'm trying to analyze m6A modification of our direct RNA seq data with Xpore.

does Xpore work with only one sample..?

yuukiiwa commented 2 weeks ago

Hi @Seongmin-Jang-1165,

xpore is for differential modification analysis, so it requires at least two samples as inputs. We would suggest you to detect m6A with m6anet (https://github.com/GoekeLab/m6anet) if you only have one sample.

Thanks!

Best wishes, Yuk Kei