data preparation from raw reads

GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

https://xpore.readthedocs.io/

MIT License

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data preparation from raw reads #36

Closed q1134269149 closed 3 years ago

q1134269149 commented 3 years ago

Hi, When I prepared the data for xpore-dataprep, I used the transcriptomic coordinates, such as the step of alignment using minimap2. However, I want to run xpore-dataprep with genomic coordinates through add the "--genome" parameter. Is there a problem with this? Thanks hqin

ploy-np commented 3 years ago

Hi @q1134269149,

No, those are the right steps. You can proceed with that.

q1134269149 commented 3 years ago

Thank you for your quick reply. hqin