Hi @ploy-np, I have modified the t2g function based on the functions I wrote for converting Chris' m6anet results to bedGraph in genomic position. I have tested this modification with the demo test dataset, and its diffmod.table is identical to the diffmod.table from the GoekeLab:master branch Thanks!
The sizes of the pickles of dictionaries generated from ENSEMBL GTF and transcriptome FASTA are reasonable:
PLEASE DON'T MERGE THIS
Hi @ploy-np, I have modified the t2g function based on the functions I wrote for converting Chris' m6anet results to bedGraph in genomic position. I have tested this modification with the demo test dataset, and its diffmod.table is identical to the diffmod.table from the GoekeLab:master branch Thanks! The sizes of the pickles of dictionaries generated from ENSEMBL GTF and transcriptome FASTA are reasonable: