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GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing
https://xpore.readthedocs.io/
MIT License
132 stars 22 forks source link

qsub batch jobs #52

Closed callumparr closed 3 years ago

callumparr commented 3 years ago

Would it be possible to breakup inputs for xpore-diffmod for qsub batch job.

Like maybe splitting the reads matching to a gene/transcript?

ploy-np commented 3 years ago

xpore was designed to run in parallel across genes. You can specify --n_processes in xpore-diffmod to be the same as what you specify in the qsub command. In this way, xpore will be run in parallel (1 gene per process).

callumparr commented 3 years ago

thank you :)