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GonzalezLab / T-lex3

GNU General Public License v3.0
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Singularity image #6

Open atb1r21 opened 1 year ago

atb1r21 commented 1 year ago

Hi,

I am looking into providing this as a Singularity image for users of a HPC service.

Docker doesn't work well in clustered computing so Singularity is our best solution.

Regarding this I have converted the Dockerfile to a Singularity image, but I have persistently had issues when trying to build my image.

Firstly I have seen download problems where I can connect but not download files:

--2022-08-05 14:30:29-- (try:16) https://tandem.bu.edu/trf/downloads/trf407b.linux64 Connecting to tandem.bu.edu (tandem.bu.edu)|128.197.114.130|:443... connected. HTTP request sent, awaiting response... Read error (Success.) in headers. Retrying.

I have been doing more experiments today and I can't connect to that server at all and it is down on my web browser too.

--2022-10-04 10:51:13-- (try:13) http://tandem.bu.edu/trf/downloads/trf407b.linux64 Connecting to tandem.bu.edu (tandem.bu.edu)|128.197.114.130|:80... failed: Connection timed out. Retrying.

Is this file necessary to build a working image? It seems like I can't access everything that is defined in the dockerfile.

Thanks,