What steps will reproduce the problem?
1. I just run fastq-mcf on sets of paired end read files. It works fine for
all of them except for one set of files. I don't see any difference between
that set and the others that would cause this.
2. I use the following command line: fastq-mcf -t 0 -D 50 -q 30
Nextera_adapters.fas H1Pplus_S20_L001_R1_001.fastq
H1Pplus_S20_L001_R2_001.fastq -o H1Pplus_cleaned_1.fastq -o
H1Pplus_cleaned_2.fastq
3. I try different option values (k, t, D), but the result is always the same.
What is the expected output? What do you see instead?
I expect two cleaned up read files, H1Pplus_cleaned_1.fastq and
H1Pplus_cleaned_2.fastq. At first it seems to work, "Scale used: 2.2
" appears on the command prompt screen. Immediately after, a windows message
appears that says "fastq-mcf has stopped working" and that windows is searching
for a solution to the problem.
What version of the product are you using? On what operating system?
ea-utils-1.1.2-621-win64 on a pc windows 7
Please provide any additional information below.
Original issue reported on code.google.com by ptsour...@gmail.com on 5 Feb 2015 at 8:18
Original issue reported on code.google.com by
ptsour...@gmail.comon 5 Feb 2015 at 8:18