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GoogleCloudPlatform / healthcare-data-harmonization-dataflow

Apache License 2.0
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Error when building jar - v2 #11

Closed alvaroandresgarayromero closed 3 years ago

alvaroandresgarayromero commented 3 years ago

Hi, I'm facing a similar issue from a closed issue that was opened on Dec 1, 2020. Thank you for your assistance.

The issue occurs when running "./gradlew shadowJar"

Distributor ID: Ubuntu Description: Ubuntu 20.04.1 LTS Release: 20.04 Codename: focal

gradle 6.3

java 1.8.0_292

protoc libprotoc 3.14.0

go 1.16.4

ZIP FILE: protoc-3.14.0-linux-x86_64.zip

$ go env GOPATH
$HOME/go

protoc binary was copied to the following path:

/usr/bin/protoc

INCLUDE files were copied to the following path:

$ sudo unzip -o $PROTOC_ZIP -d /usr/local 'include/*'
Archive:  protoc-3.14.0-linux-x86_64.zip
   creating: /usr/local/include/google/
   creating: /usr/local/include/google/protobuf/
  inflating: /usr/local/include/google/protobuf/wrappers.proto  
  inflating: /usr/local/include/google/protobuf/field_mask.proto  
  inflating: /usr/local/include/google/protobuf/api.proto  
  inflating: /usr/local/include/google/protobuf/struct.proto  
  inflating: /usr/local/include/google/protobuf/descriptor.proto  
  inflating: /usr/local/include/google/protobuf/timestamp.proto  
   creating: /usr/local/include/google/protobuf/compiler/
  inflating: /usr/local/include/google/protobuf/compiler/plugin.proto  
  inflating: /usr/local/include/google/protobuf/empty.proto  
  inflating: /usr/local/include/google/protobuf/any.proto  
  inflating: /usr/local/include/google/protobuf/source_context.proto  
  inflating: /usr/local/include/google/protobuf/type.proto  
  inflating: /usr/local/include/google/protobuf/duration.proto  

$ ls -l /usr/local/include
total 4
drwxr-x--- 3 root root 4096 Nov 13  2020 google

LOG:

$ ./gradlew shadowJar
Starting a Gradle Daemon, 1 incompatible and 1 stopped Daemons could not be reused, use --status for details

> Task :buildDeps
> Task :buildDeps
Cloning latest mapping engine code...
Cloning into '/home/alvaro/Documents/gcplatform/healthcare-data-harmonization-dataflow/build/tmp/build_deps'...
Building mapping engine...
google/protobuf/any.proto: File not found.
proto/mapping.proto:5:1: Import "google/protobuf/any.proto" was not found or had errors.
proto/mapping.proto: "google.protobuf.Any" is not defined.
google/protobuf/any.proto: File not found.
proto/mapping.proto:5:1: Import "google/protobuf/any.proto" was not found or had errors.
proto/mapping.proto: "google.protobuf.Any" is not defined.
proto/http.proto:5:1: Import "proto/mapping.proto" was not found or had errors.
proto/http.proto:52:3: "ValueSource" is not defined.
proto/http.proto:55:3: "ValueSource" is not defined.
proto/harmonization.proto:5:1: Import "proto/http.proto" was not found or had errors.
proto/harmonization.proto:6:1: Import "proto/mapping.proto" was not found or had errors.
proto/harmonization.proto:17:5: "MappingConfig" is not defined.
proto/harmonization.proto:38:3: "Location" is not defined.
proto/harmonization.proto:47:12: "Location" is not defined.
proto/harmonization.proto:62:3: "Location" is not defined.
proto/library.proto:5:1: Import "proto/harmonization.proto" was not found or had errors.
proto/library.proto:6:1: Import "proto/http.proto" was not found or had errors.
proto/library.proto:7:1: Import "proto/mapping.proto" was not found or had errors.
proto/library.proto:17:12: "ProjectorDefinition" is not defined.
proto/library.proto:20:12: "ServerDefinition" is not defined.
proto/library.proto:24:12: "CloudFunction" is not defined.
proto/library.proto:29:12: "HttpFetchQuery" is not defined.
proto/library.proto:41:3: "MappingType" is not defined.
proto/library.proto:44:3: "Location" is not defined.
google/protobuf/any.proto: File not found.
proto/mapping.proto:5:1: Import "google/protobuf/any.proto" was not found or had errors.
proto/mapping.proto: "google.protobuf.Any" is not defined.
proto/http.proto:5:1: Import "proto/mapping.proto" was not found or had errors.
proto/http.proto:52:3: "ValueSource" is not defined.
proto/http.proto:55:3: "ValueSource" is not defined.
google/protobuf/any.proto: File not found.
proto/mapping.proto:5:1: Import "google/protobuf/any.proto" was not found or had errors.
proto/mapping.proto: "google.protobuf.Any" is not defined.
proto/http.proto:5:1: Import "proto/mapping.proto" was not found or had errors.
proto/http.proto:52:3: "ValueSource" is not defined.
proto/http.proto:55:3: "ValueSource" is not defined.
proto/harmonization.proto:5:1: Import "proto/http.proto" was not found or had errors.
proto/harmonization.proto:6:1: Import "proto/mapping.proto" was not found or had errors.
proto/harmonization.proto:17:5: "MappingConfig" is not defined.
proto/harmonization.proto:38:3: "Location" is not defined.
proto/harmonization.proto:47:12: "Location" is not defined.
proto/harmonization.proto:62:3: "Location" is not defined.
proto/library.proto:5:1: Import "proto/harmonization.proto" was not found or had errors.
proto/library.proto:6:1: Import "proto/http.proto" was not found or had errors.
proto/library.proto:7:1: Import "proto/mapping.proto" was not found or had errors.
proto/library.proto:17:12: "ProjectorDefinition" is not defined.
proto/library.proto:20:12: "ServerDefinition" is not defined.
proto/library.proto:24:12: "CloudFunction" is not defined.
proto/library.proto:29:12: "HttpFetchQuery" is not defined.
proto/library.proto:41:3: "MappingType" is not defined.
proto/library.proto:44:3: "Location" is not defined.
proto/data_harmonization.proto:5:1: Import "proto/harmonization.proto" was not found or had errors.
proto/data_harmonization.proto:6:1: Import "proto/library.proto" was not found or had errors.
proto/data_harmonization.proto:16:12: "LibraryConfig" is not defined.
proto/data_harmonization.proto:21:3: "CodeHarmonizationConfig" is not defined.
proto/data_harmonization.proto:24:3: "UnitHarmonizationConfig" is not defined.
proto/data_harmonization.proto:27:3: "StructureMappingConfig" is not defined.
google/protobuf/any.proto: File not found.
proto/mapping.proto:5:1: Import "google/protobuf/any.proto" was not found or had errors.
proto/mapping.proto: "google.protobuf.Any" is not defined.
proto/http.proto:5:1: Import "proto/mapping.proto" was not found or had errors.
proto/http.proto:52:3: "ValueSource" is not defined.
proto/http.proto:55:3: "ValueSource" is not defined.
proto/harmonization.proto:5:1: Import "proto/http.proto" was not found or had errors.
proto/harmonization.proto:6:1: Import "proto/mapping.proto" was not found or had errors.
proto/harmonization.proto:17:5: "MappingConfig" is not defined.
proto/harmonization.proto:38:3: "Location" is not defined.
proto/harmonization.proto:47:12: "Location" is not defined.
proto/harmonization.proto:62:3: "Location" is not defined.
Downloading ANTLR 4.7.1 to ./.antlr/antlr.jar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2187k  100 2187k    0     0  3418k      0 --:--:-- --:--:-- --:--:-- 3418k
Entering /home/alvaro/Documents/gcplatform/healthcare-data-harmonization-dataflow/build/tmp/build_deps/mapping_engine/transform
# github.com/GoogleCloudPlatform/healthcare-data-harmonization/mapping_engine/errors
../errors/proto.go:105:23: undefined: "github.com/GoogleCloudPlatform/healthcare-data-harmonization/mapping_engine/proto".ValueSource
../errors/proto.go:119:14: undefined: "github.com/GoogleCloudPlatform/healthcare-data-harmonization/mapping_engine/proto".ProjectorDefinition
# github.com/GoogleCloudPlatform/healthcare-data-harmonization/mapping_language/transpiler
../../mapping_language/transpiler/env.go:40:13: undefined: "github.com/GoogleCloudPlatform/healthcare-data-harmonization/mapping_engine/proto".FieldMapping
../../mapping_language/transpiler/stacks.go:23:20: undefined: "github.com/GoogleCloudPlatform/healthcare-data-harmonization/mapping_engine/proto".ValueSource
../../mapping_language/transpiler/transpiler.go:30:20: undefined: "github.com/GoogleCloudPlatform/healthcare-data-harmonization/mapping_engine/proto".ProjectorDefinition

> Task :buildDeps FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':buildDeps'.
> Process 'command './build_deps.sh'' finished with non-zero exit value 2

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

BUILD FAILED in 8s
1 actionable task: 1 executed
alvaroandresgarayromero commented 3 years ago

Hi, I don't get errors anymore. The solution in here:

https://stackoverflow.com/questions/41594991/compile-protobuf-client-code-on-ubuntu-but-include-file-is-not-found/41604412#41604412