GoogleCloudPlatform / vertex-ai-alphafold-inference-pipeline

This repository compiles prescriptive guidance and code samples demonstrating how to operationalize AlphaFold batch inference using Vertex AI Pipelines.
Apache License 2.0
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os env based parameters for the alphafold pipeline were not loaded after changing them in the notebook #66

Open jmbrinkman opened 1 month ago

jmbrinkman commented 1 month ago

I adjusted the main notebook and the pipeline package to fix this. It probably needs more work to really do this well, using env variables like this seems a bit clunky but it would take quite some effort to fix this.