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GoogleCloudPlatform / wsi-to-dicom-converter

Conversion tool/library for converting whole slide images to DICOM
Apache License 2.0
77 stars 26 forks source link

Can it handle .ndpi Z-stack image? #40

Closed Yuvi-416 closed 4 years ago

Yuvi-416 commented 4 years ago

Can it handle .ndpi Z-stack image?

dzelemba commented 4 years ago

This tool uses OpenSlide to read various WSI formats and OpenSlide does support NDPI: https://openslide.org/formats/hamamatsu/, but OpenSlide does not support multiple focal planes: https://github.com/openslide/openslide/issues/31. Let me know if this answers your question.

Yuvi-416 commented 4 years ago

Hello there, Thanks for your suggestion, it solved my queries. Do you know any libraries in python which can handle this kind of image?

dzelemba commented 4 years ago

No I'm not sure sorry, you could try and check out BioFormats: https://www.openmicroscopy.org/bio-formats/.