Closed arnikz closed 2 years ago
The conditionals always yield to (single) "{sample}" wildcard:
https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/survivor.smk#L4 https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/survivor.smk#L10 https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/survivor.smk#L43 https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/survivor.smk#L51
However, the resulting SV callsets are not affected.
The conditionals always yield to (single) "{sample}" wildcard:
https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/survivor.smk#L4 https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/survivor.smk#L10 https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/survivor.smk#L43 https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/survivor.smk#L51
However, the resulting SV callsets are not affected.