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GooglingTheCancerGenome / sv-callers

Snakemake-based workflow for detecting structural variants in genomic data
https://research-software.nl/software/sv-callers
Apache License 2.0
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Incorrect sample wildcard(s) returned in delly rule #73

Closed arnikz closed 2 years ago

arnikz commented 2 years ago

the conditionals always yield to (single) "{sample}" wildcard: https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/delly.smk#L127 https://github.com/GooglingTheCancerGenome/sv-callers/blob/c45ba25ec64db073fc343f722d8434604aff6976/workflow/rules/delly.smk#L134

related to #72