GooglingTheCancerGenome / sv-channels

Deep learning-based structural variant filtering method
https://research-software.nl/software/sv-channels
Apache License 2.0
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Add notebooks to Binder #41

Open arnikz opened 4 years ago

arnikz commented 4 years ago

Note: Issue related to #36. Use nbdime to diff notebooks.

git checkout iss36
...
./scripts/R/notebooks/Benchmark/Benchmark plots.ipynb
./scripts/R/notebooks/Benchmark/Benchmark.ipynb
./scripts/R/notebooks/Benchmark.ipynb
./notebooks/Gtcg_1.ipynb
./notebooks/sandbox/Gtcg_12_09_18_mills_nanosv_97acc-LS-orig.ipynb
./notebooks/sandbox/Generate_reference_test_set.ipynb
./notebooks/sandbox/Generate_training_set.ipynb
./notebooks/sandbox/Gtcg_12_09_18_mills_nanosv_97acc-LS-ArtData_50bp.ipynb
./notebooks/sandbox/Gtcg_12_09_18_PATIENT1_nanosv_manta-LS.ipynb
./notebooks/sandbox/Patients-SVs-all_channels.ipynb
./notebooks/sandbox/Check_channels.ipynb
./notebooks/sandbox/Generate_training_set_OC.ipynb
./notebooks/sandbox/NA12878-SVs-all_channels.ipynb
./notebooks/sandbox/Whole_genome_Artificial_TrainingData.ipynb
./notebooks/sandbox/Gtcg_27_09_18_Chr17_Chr12_TRA.ipynb
./notebooks/sandbox/Gtcg_27_09_18_Chr17_DUP.ipynb
./notebooks/sandbox/Gtcg_12_09_18_mills_nanosv_97acc-LS.ipynb
./notebooks/sandbox/Generate_mixed_training_set.ipynb
./notebooks/preliminary.ipynb
arnikz commented 4 years ago

Could you move the experimental notebooks in /notebooks/sandbox/ dir into sandbox branch?