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Gravitate-Health / focusing-manager

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Too many extensions returned #36

Closed jkiddo closed 5 months ago

jkiddo commented 6 months ago

The following invocation

2024-05-20T23:12:22.753+02:00  INFO 97220 --- [nio-8080-exec-8] okhttp3.OkHttpClient                     : --> POST https://gravitate-health.lst.tfo.upm.es/focusing/focus/bundlepackageleaflet-dk-94a96e39cfdcd8b378d12dd4063065f9
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2024-05-20T23:12:22.754+02:00  INFO 97220 --- [nio-8080-exec-8] okhttp3.OkHttpClient                     : User-Agent: OpenAPI-Generator/MVP2/java
2024-05-20T23:12:22.754+02:00  INFO 97220 --- [nio-8080-exec-8] okhttp3.OkHttpClient                     : Authorization: Bearer eyJhbGciOiJSUzI1NiIsInR5cCIgOiAiSldUIiwia2lkIiA6ICJVWEtjb1E5ME1QWmhyeDVyQThPR3NMQS10SE5hb1dqRGRIV2NIY21wNXJrIn0.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.Nuc4NQdUtkGFthPQbpRF99kIDENIxuetrl0H5YTwtYhWFg9Fr69iS_24M9Bt2JXSDtii_eIJ0QpeAD5GfjJ5LC9KWiI6hYcd6nudR_Ov-K0pyi-Syv2bZrIqr2J_9NWHklEjVkesZxLX5arn8UAO9pvAIA496IZSQ1TKLGV5EVqXBpopqYctciGFyx9Slv5tGUiNilYPkuxuWebxCEB_iXLO8OugA7DVFU4Dj_CMW25hDDNYMNsVAH-dukUNL37fdc8lLIq5CR_weVcz7a26eLdssTszyZzaKPAfyj4gb3iqc9-bTjiMCiK7I4hST6SxJ61NrDqCyNqxDywimB2LlA
2024-05-20T23:12:22.754+02:00  INFO 97220 --- [nio-8080-exec-8] okhttp3.OkHttpClient                     : 
2024-05-20T23:12:22.754+02:00  INFO 97220 --- [nio-8080-exec-8] okhttp3.OkHttpClient                     : {"ips":{"resourceType":"Bundle","meta":{"lastUpdated":"2024-05-20T21:03:02.589+00:00"},"type":"document","timestamp":"2024-05-20T21:03:02.589+00:00","entry":[{"fullUrl":"urn:oid:7e88027d-c06d-49cb-ad31-3a0709edd678","resource":{"resourceType":"Composition","identifier":{"system":"urn:oid:2.16.724.4.8.10.200.10","value":"urn:oid:b143e5b8-8ce2-4925-8dbb-1a2634c688d6"},"status":"final","type":{"coding":[{"system":"http://loinc.org","code":"60591-5","display":"Patient summary Document"}]},"subject":{"reference":"Patient/37478061-c5bf-35ce-9fd7-b981a6f53f97"},"date":"2024-05-20T21:03:02+00:00","title":"Patient Summary as of Mon May 20 21:03:02 GMT 2024","section":[{"title":"Medications","code":{"coding":[{"system":"http://loinc.org","code":"10160-0","display":"History of Medication use 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quadrivalent"}]},"patient":{"reference":"Patient/6651632d-31ab-346a-afd0-71271798eb70"},"occurrenceDateTime":"2023-06-21T11:59:25+00:00"}},{"fullUrl":"MedicationStatement/ef5a86fd-5bbd-3506-8b96-32f00224292b","resource":{"resourceType":"MedicationStatement","id":"ef5a86fd-5bbd-3506-8b96-32f00224292b","meta":{"source":"https://services.nsi.dk/en/Services/FMK","profile":["http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-medicationstatement","http://hl7.org/fhir/uv/ips/StructureDefinition/MedicationStatement-uv-ips"]},"identifier":[{"system":"http://www.dkma.dk/medicinecard/xml.schema/2015/01/01/DrugMedicationIdentifierType","value":"23552167"}],"status":"active","medicationReference":{"reference":"Medication/dbbe770a-19f0-35f5-91cf-6a28198340bb"},"subject":{"reference":"Patient/37478061-c5bf-35ce-9fd7-b981a6f53f97"},"effectivePeriod":{"start":"2023-06-21T00:00:00+00:00","end":"2025-06-21T00:00:00+00:00"},"informationSource":{"reference":"Patient/37478061-c5bf-35ce-9fd7-b981a6f53f97"},"dosage":[{"text":"Dosering fra d. 21. juni 2023:\n2 tabletter morgen og 2 tabletter aften - hver dag","additionalInstruction":[{"coding":[{"system":"http://www.dkma.dk/medicinecard/xml.schema/2015/01/01/DosageTypeType","code":"FAST","display":"fast"}]}],"timing":{"repeat":{"boundsPeriod":{"start":"2023-06-21T00:00:00+00:00"},"frequency":1,"period":1,"periodUnit":"d","when":["MORN","EVE"]}},"route":{"coding":[{"system":"https://laegemiddelstyrelsen.dk/LMS11/Kode","code":"OR","display":"Oral anvendelse"}]},"doseAndRate":[{"doseQuantity":{"value":2,"unit":"tabletter"}}]}]}},{"fullUrl":"MedicationStatement/6bceb9b8-38c1-34a1-8514-a2b8d97beb8f","resource":{"resourceType":"MedicationStatement","id":"6bceb9b8-38c1-34a1-8514-a2b8d97beb8f","meta":{"source":"https://services.nsi.dk/en/Services/FMK","profile":["http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-medicationstatement","http://hl7.org/fhir/uv/ips/StructureDefinition/MedicationStatement-uv-ips"]},"identifier":[{"system":"http://www.dkma.dk/medicinecard/xml.schema/2015/01/01/DrugMedicationIdentifierType","value":"23552805"}],"status":"active","medicationReference":{"reference":"Medication/ac1cd0d8-59cf-3721-b345-a27dfb4d3f79"},"subject":{"reference":"Patient/37478061-c5bf-35ce-9fd7-b981a6f53f97"},"effectivePeriod":{"start":"2023-06-21T00:00:00+00:00","end":"2025-06-21T00:00:00+00:00"},"informationSource":{"reference":"Patient/37478061-c5bf-35ce-9fd7-b981a6f53f97"},"dosage":[{"text":"Dosering fra d. 21. juni 2023:\n1 kapsel 3 gange hver dag\nBemærk: ved et hovedmåltid","additionalInstruction":[{"coding":[{"system":"http://www.dkma.dk/medicinecard/xml.schema/2015/01/01/DosageTypeType","code":"FAST","display":"fast"}]}],"patientInstruction":"ved et hovedmåltid","timing":{"repeat":{"boundsPeriod":{"start":"2023-06-21T00:00:00+00:00"},"frequency":3,"period":1,"periodUnit":"d"}},"route":{"coding":[{"system":"https://laegemiddelstyrelsen.dk/LMS11/Kode","code":"OR","display":"Oral 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gange hver dag\nBemærk: ved et måltid","additionalInstruction":[{"coding":[{"system":"http://www.dkma.dk/medicinecard/xml.schema/2015/01/01/DosageTypeType","code":"FAST","display":"fast"}]}],"patientInstruction":"ved et måltid","timing":{"repeat":{"boundsPeriod":{"start":"2024-03-04T00:00:00+00:00"},"frequency":3,"period":1,"periodUnit":"d"}},"route":{"coding":[{"system":"https://laegemiddelstyrelsen.dk/LMS11/Kode","code":"OR","display":"Oral anvendelse"}]},"doseAndRate":[{"doseQuantity":{"value":1,"unit":"tablet"}}]}]}},{"fullUrl":"MedicationStatement/a82376fd-2f61-35f3-bca4-6ab22dc4835e","resource":{"resourceType":"MedicationStatement","id":"a82376fd-2f61-35f3-bca4-6ab22dc4835e","meta":{"source":"https://services.nsi.dk/en/Services/FMK","profile":["http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-medicationstatement","http://hl7.org/fhir/uv/ips/StructureDefinition/MedicationStatement-uv-ips"]},"identifier":[{"system":"http://www.dkma.dk/medicinecard/xml.schema/2015/01/01/DrugMedicationIdentifierType","value":"23552175"}],"status":"active","medicationReference":{"reference":"Medication/4d489e12-d982-3ce3-ae7a-bbfd103df8ba"},"subject":{"reference":"Patient/37478061-c5bf-35ce-9fd7-b981a6f53f97"},"effectivePeriod":{"start":"2023-06-21T00:00:00+00:00","end":"2025-06-21T00:00:00+00:00"},"informationSource":{"reference":"Patient/37478061-c5bf-35ce-9fd7-b981a6f53f97"},"dosage":[{"text":"Dosering fra d. 21. juni 2023:\n1 tablet hver dag\nBemærk: før et måltid","additionalInstruction":[{"coding":[{"system":"http://www.dkma.dk/medicinecard/xml.schema/2015/01/01/DosageTypeType","code":"FAST","display":"fast"}]}],"patientInstruction":"før et måltid","timing":{"repeat":{"boundsPeriod":{"start":"2023-06-21T00:00:00+00:00"},"frequency":1,"period":1,"periodUnit":"d"}},"route":{"coding":[{"system":"https://laegemiddelstyrelsen.dk/LMS11/Kode","code":"OR","display":"Oral 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Returns an ePI with roughly 3700 extensions. That seems a bit excessive. Its too many actually. Be aware the body is too large for me to copy here so we should probably schedule a session.

aalonsolopez commented 5 months ago

It's likely due to the automatic preprocessor. Can you join us at today's 2:00 PM meeting to talk about this? Or at least test what could have happened.

jkiddo commented 5 months ago

It concerns some of the biktary entries found at https://gravitate-health.lst.tfo.upm.es/epi/api/fhir/List?identifier=http%3A%2F%2Fspor.ema.europa.eu%2Fv2%2Fmarketing-authorisation-numbers%7CEU%2F1%2F18%2F1289%2F001

aalonsolopez commented 5 months ago

Okay, I have found the problem: currently, the automatic preprocessor only supports English and Spanish, so if another language is found, it malfunctions. I did not handle this case so I will fix it ASAP. By Thursday I expect to have this done

aalonsolopez commented 5 months ago

For now, there is a change in draft that has a quick fix for this

if language of the resource is en or es --> 200 OK preprocess any other --> 304 Not Modified and return the ePI with no modifications

aalonsolopez commented 5 months ago

This was uploaded to dev yesterday btw