Gravity-Spy / GravitySpy

This repo contains code for the GravitySpy Citizen Science project.
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Unable to use gravityspy as a package to classify trigger events #44

Open rutujagurav opened 5 months ago

rutujagurav commented 5 months ago

Summary

I want to follow this gravityspy documentation page to classify a trigger, so I am trying to install gravityspy following the installation instructions in the documentation but I am getting an error ERROR: Could not find a version that satisfies the requirement mysqlclient>=1.4.0 (from gravityspy). I tried installing mysqlclient in my conda environment separately but I still get this error.

I also tried using the existing environment that has the gravityspy package installed which is found here on ldas machines - /home/gravityspy/.conda/envs/gravityspy-gpu-py37/ - but the example code in the documentation didn't run successfully and produce the following error,

(gravityspy-gpu-py37) [rutuja.gurav@ldas-pcdev6 ~]$ python test_gravityspy.py 
Using TensorFlow backend.
Traceback (most recent call last):
  File "test_gravityspy.py", line 6, in <module>
    path_to_cnn=model_filepath)
  File "/home/gravityspy/.conda/envs/gravityspy-gpu-py37/lib/python3.7/site-packages/gravityspy/classify/classify.py", line 91, in classify
    **kwargs)
  File "/home/gravityspy/.conda/envs/gravityspy-gpu-py37/lib/python3.7/site-packages/gravityspy/utils/utils.py", line 230, in label_q_scans
    numpy.array(f['/labels/labels']).astype(str).T[0])
  File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
  File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
  File "/home/gravityspy/.conda/envs/gravityspy-gpu-py37/lib/python3.7/site-packages/h5py/_hl/group.py", line 264, in __getitem__
    oid = h5o.open(self.id, self._e(name), lapl=self._lapl)
  File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
  File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
  File "h5py/h5o.pyx", line 190, in h5py.h5o.open
KeyError: 'Unable to open object (component not found)'

What should have happened?

The example code from the documentation should have run successfully

Steps to reproduce

In a terminal on ldas-pdev6.ligo-la.caltech.edu, run command conda activate /home/gravityspy/.conda/envs/gravityspy-gpu-py37/

Then run the following lines of python code,

from gravityspy.classify import classify
event_time = 1127700030.877928972
model_filepath = '/home/gravityspy/GravitySpy/models/similarity-model-O3.h5'
results = classify(event_time=event_time,
                    channel_name='L1:GDS-CALIB_STRAIN',
                    path_to_cnn=model_filepath)
print(results)