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Graylab / IgFold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
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ModuleNotFoundError: No module named 'abnumber' #34

Closed linuxonly801 closed 1 year ago

linuxonly801 commented 1 year ago

when i follow the demo, the following error occurs:

Traceback (most recent call last): File "", line 1, in File "/data/personal/yankai/LiuChang/IgFold/igfold/IgFoldRunner.py", line 120, in fold truncate_sequences=truncate_sequences, File "/data/personal/yankai/LiuChang/IgFold/igfold/utils/folding.py", line 220, in fold do_renum=do_renum, File "/data/personal/yankai/LiuChang/IgFold/igfold/utils/folding.py", line 134, in processprediction from igfold.utils.abnumber import renumberpdb File "/data/personal/yankai/LiuChang/IgFold/igfold/utils/abnumber.py", line 2, in from abnumber import Chain ModuleNotFoundError: No module named 'abnumber'

so, where can I find the abnumber? I only found abnumber_.py.

px172 commented 1 year ago

Try https://github.com/prihoda/AbNumber

conda install -c bioconda abnumber

jeffreyruffolo commented 1 year ago

Sorry for the vague error, but yes the issue can be resolved by install abnumber. If you don't want to install / or not able, you can also pass do_renum=False to the function.