Closed seanryanchan closed 1 year ago
Nitpicky, but typos are typos. The demo code below contains a small typo:
from igfold import IgFoldRunner sequences = { "H": "EVQLVQSGPEVKKPGTSVKVSCKASGFTFMSSAVQWVRQARGQRLEWIGWIVIGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRSEDTAVYYCAAPYCSSISCNDGFDIWGQGTMVTVS", "L": ``` "DVVMTQTPFSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPYTFGGGTKLEIK" } igfold = IgFoldRunner() emb = igfold.embed( sequences=sequences, # Antibody sequences ) emb.bert_embs # Embeddings from AntiBERTy final hidden layer (dim: 1, L, 512) emb.gt_embs # Embeddings after graph transformer layers (dim: 1, L, 64) emb.strucutre_embs # Embeddings after template incorporation IPA (dim: 1, L, 64)
the last line needs to be fixed. emb.strucuture_embs -> emb.structure_embs
emb.strucuture_embs
emb.structure_embs
Thanks, now fixed!
Nitpicky, but typos are typos. The demo code below contains a small typo:
the last line needs to be fixed.
emb.strucuture_embs
->emb.structure_embs