Graylab / IgFold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
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google colab error #38

Closed Samuel-gwb closed 1 year ago

Samuel-gwb commented 1 year ago

Hi, Just run the linked google colab ipynb without any modification, and got following error messages when rungining prediction, mainly refered to libstdc++.so.6: version `GLIBCXX_3.4.29' not found. I executed "!apt-get upgrade libstdc++6", however, same error still appeared.

Messages as:


ImportError Traceback (most recent call last) in 4 sys.path.insert(0, f"/usr/local/lib/python{python_version}/site-packages/") 5 ----> 6 from igfold.utils.visualize import * 7 from igfold import IgFoldRunner 8

12 frames /usr/local/lib/python3.9/site-packages/pandas/core/window/ewm.py in 13 14 from pandas._libs.tslibs import Timedelta ---> 15 import pandas._libs.window.aggregations as window_aggregations 16 from pandas._typing import ( 17 Axis,

ImportError: /lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /usr/local/lib/python3.9/site-packages/pandas/_libs/window/aggregations.cpython-39-x86_64-linux-gnu.so)


NOTE: If your import is failing due to a missing package, you can manually install dependencies using either !pip or !apt.

To view examples of installing some common dependencies, click the "Open Examples" button below.