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Graylab / IgFold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
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Multiple Sequence Simultaneous Inference #43

Open ChengLeiYu-Maker opened 1 year ago

ChengLeiYu-Maker commented 1 year ago

Can we use put multiple antibody sequences into the model ?

jeffreyruffolo commented 1 year ago

Hello, if I'm understanding the question correctly, you're interested in running parallel predictions in a single batch, which is possible in principle. However, because the refinement step for each prediction isn't run on GPU, there would likely be little effect on overall runtime for full-atom structure prediction. If you just need an embedding or an approximate distance-matrix, batch mode should be faster.

ChengLeiYu-Maker commented 1 year ago

How can I use batch mode for multiply sequence as input？ Can you give an example? Thanks