rcorces
commented
1 year ago Hi @momur! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and feature requests should be posted in the Discussions section, not in Issues.
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Hello,
I have single cell multiomics data (scRNAseq & scATACseq). I have done preprocessing, quality control and clustering steps in Seurat-Signac. I used Weighted Nearest Neighbor Analysis approach for clustering. The clusters I have are biologically meaningful and I would like to use my barcodes and corresponding cluster labels in my Signac object to annotate cells in ArchR.
I have tried clustering scATACseq data with several different parameters in ArchR but the clusters dont look similar to what I got. I have tried labelling scATAC-seq clusters with scRNA-seq information following ArchR tutorial but since clustering step in ArchR doesn't result in similar clusters, label transfer was not successful.
Barcodes are matching. So I believe that there should be way to use barcodes and cluster labels from Signac to annotate cells in ArchR. I would like to know that how can I do it in ArchR?
Thanks!