rcorces
commented
9 months ago Hi @uhnxuxi! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and feature requests should be posted in the Discussions section, not in Issues.
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uhnxuxi
seTSS <- getFootprints( ArchRProj = Fibroblast_mCAF, positions = GRangesList(TSS = getTSS(Fibroblast_mCAF)), groupBy = "group", flank = 250)
ArchR logging to : ArchRLogs/ArchR-getFootprints-2fcf91d741-Date-2024-02-12_Time-22-30-36.917754.log If there is an issue, please report to github with logFile! 2024-02-12 22:30:37.004513 : Computing Kmer Bias Table, 0.001 mins elapsed. 2024-02-12 22:30:50.2054 : Finished Computing Kmer Tables, 0.22 mins elapsed. 2024-02-12 22:30:50.206266 : Computing Footprints, 0.221 mins elapsed. Error in h(simpleError(msg, call)) : error in evaluating the argument 'values' in selecting a method for function 'Rle': Object 'Coverage/chrY/Values' does not exist in this HDF5 file.
This is breast cancer patients' single cell multiome data.So all the patients are female. When I add the addGroupCoverages, there is for sure no chrY exists. I don't know how to fix it.