Arrows are being created, but then unknown error, and arrows are deleted. No trace of the error in the log file.

[drowsygoat]

I already installed dev version of ArchR (1.0.3), downgraded to R 4.1, and switched off sub-threading. For tutorial files with hg19 genome the workflow works correctly. However, for my data and genome (custom chicken), I'm still experiencing an error that is, unfortunately, only recorded in the log file very enigmatically as:

createArrowFiles has encountered an error, checking if any ArrowFiles completed..

When this error pops up, the arrow file that was created during the run is getting removed. Maybe some good soul could hint me about how to troubleshoot further? Log file below:

ArchR-createArrows-6a053d25dd6d-Date-2024-05-24_Time-14-06-49.140358.log

Also, there were a few warnings, but not sure if they are relevant to the issue:

Warning messages:
1: package ‘Rsamtools’ was built under R version 4.1.1

2: In sprintf("%s Reading TabixFile %s Percent", prefix,  ... :
  one argument not used by format '%s Reading TabixFile %s Percent'

other warnings were identical to the last one above.

[rcorces]

Hi @drowsygoat! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a PI. I have not been responding to issue posts and I have not been pushing updates to the software. We are actively searching to hire a computational biologist to continue to develop and maintain ArchR and related tools. If you know someone who might be a good fit, please let us know! In the meantime, your issue will likely go without a reply. Most issues with ArchR right not relate to compatibility. Try reverting to R 4.1 and Bioconductor 3.15. Newer versions of Seurat and Matrix also are causing issues. Sorry for not being able to provide active support for this package at this time.