can't install ArchR on my mac Sonoma 14.6.1

[yeroslaviz]

devtools::install_github("GreenleafLab/ArchR", ref="master", repos = BiocManager::repositories())

If your issue persists, then please submit this bug report.

PLEASE FILL OUT THE RELEVANT INFORMATION AND DELETE THE UNUSED PORTIONS OF THIS ISSUE TEMPLATE.

trying to install the package results in an error

The downloaded binary packages are in
    /var/folders/wf/jh13493j43x_jjyqpzd6396m0000gn/T//RtmpLUbe4G/downloaded_packages
-- R CMD build -------------------------------------------------------------------------------------------------------------------------------------------------------
v  checking for file '/private/var/folders/wf/jh13493j43x_jjyqpzd6396m0000gn/T/RtmpLUbe4G/remotes46581186d448/GreenleafLab-ArchR-d9e741c/DESCRIPTION' (555ms)
-  preparing 'ArchR': (613ms)
v  checking DESCRIPTION meta-information ...
-  cleaning src
-  checking for LF line-endings in source and make files and shell scripts (992ms)
-  checking for empty or unneeded directories
-  building 'ArchR_1.0.2.tar.gz'
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     'ArchR/.github/ISSUE_TEMPLATE/bug-error-report---no-usage-questions---feature-requests--use-discussions--.md'

* installing *source* package 'ArchR' ...
** using staged installation
** libs
using C++ compiler: 'clang version 4.0.0 (tags/RELEASE_400/final)'
using SDK: 'MacOSX14.4.sdk'
/usr/local/clang4/bin/clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Correlation.cpp -o Correlation.o
clang-4.0: warning: optimization flag '-falign-functions=64' is not supported [-Wignored-optimization-argument]
In file included from Correlation.cpp:1:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include/Rcpp.h:27:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include/RcppCommon.h:30:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include/Rcpp/r/headers.h:66:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include/Rcpp/platform/compiler.h:100:
In file included from /usr/local/clang4/bin/../include/c++/v1/cmath:305:
In file included from /usr/local/clang4/bin/../include/c++/v1/math.h:301:
In file included from /usr/local/include/math.h:32:
In file included from /usr/local/include/Availability.h:177:
/usr/local/include/AvailabilityInternal.h:176:10: fatal error: 'AvailabilityInternalLegacy.h' file not found
#include <AvailabilityInternalLegacy.h>
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [Correlation.o] Error 1
ERROR: compilation failed for package 'ArchR'
* removing '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/ArchR'
Warning message:
In i.p(...) :
  installation of package '/var/folders/wf/jh13493j43x_jjyqpzd6396m0000gn/T//RtmpLUbe4G/file46585fa196f6/ArchR_1.0.2.tar.gz' had non-zero exit status

any ideas hw to solve this?

thanks

Assa

> sessionInfo()
R version 4.4.1 (2024-06-14)
Platform: x86_64-apple-darwin20
Running under: macOS Sonoma 14.6.1

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

Random number generation:
 RNG:     Mersenne-Twister 
 Normal:  Inversion 
 Sample:  Rounding 

locale:
[1] C

time zone: Europe/Berlin
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] devtools_2.4.5 usethis_3.0.0 

loaded via a namespace (and not attached):
 [1] miniUI_0.1.1.1      BiocManager_1.30.25 compiler_4.4.1     
 [4] promises_1.3.0      Rcpp_1.0.13         stringr_1.5.1      
 [7] callr_3.7.6         later_1.3.2         fastmap_1.2.0      
[10] mime_0.12           R6_2.5.1            curl_5.2.2         
[13] htmlwidgets_1.6.4   desc_1.4.3          profvis_0.3.8      
[16] shiny_1.9.1         rlang_1.1.4         cachem_1.1.0       
[19] stringi_1.8.4       httpuv_1.6.15       fs_1.6.4           
[22] pkgload_1.4.0       memoise_2.0.1       cli_3.6.3          
[25] magrittr_2.0.3      ps_1.7.7            processx_3.8.4     
[28] digest_0.6.37       xtable_1.8-4        remotes_2.5.0      
[31] lifecycle_1.0.4     vctrs_0.6.5         glue_1.7.0         
[34] urlchecker_1.0.1    sessioninfo_1.2.2   pkgbuild_1.4.4     
[37] purrr_1.0.2         tools_4.4.1         ellipsis_0.3.2     
[40] htmltools_0.5.8.1  

[rcorces]

Hi @yeroslaviz! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a PI. I have not been responding to issue posts and I have not been pushing updates to the software. We are actively searching to hire a computational biologist to continue to develop and maintain ArchR and related tools. If you know someone who might be a good fit, please let us know! In the meantime, your issue will likely go without a reply. Most issues with ArchR right not relate to compatibility. Try reverting to R 4.1 and Bioconductor 3.15. Newer versions of Seurat and Matrix also are causing issues. Sorry for not being able to provide active support for this package at this time.