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GreenleafLab / ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
MIT License
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Add ProjectDim function #401

Closed lzj1769 closed 3 years ago

lzj1769 commented 3 years ago

Thanks for this great package.

I am wondering if ArchR can provide a function to project matrix to low dimension, for example, here is how Seurat does:

# If you wold like to observe genes that are strongly correlated with the first MDS coordinate
pbmc <- ProjectDim(pbmc, reduction = "mds")

thanks,

jgranja24 commented 3 years ago

Hmmm this seems reasonable I will take a look further into this.