Add way to start process from only a peak matrix

GreenleafLab / ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

MIT License

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Add way to start process from only a peak matrix #501

Closed GregorySchwartz closed 3 years ago

GregorySchwartz commented 3 years ago

I have some data that is processed and presented as a peak matrix. It would be quite useful to use this peak matrix as the starting point in ArchR. Is it possible to add this feature, without needing the BAM / fragment file?

rcorces commented 3 years ago

This is a longer term goal for us. I agree that it would be useful but its quite difficult to actually implement since there are so many aspects of an ArchRProject that arent captured by a simple peak matrix. I do not see this feature being implemented in the near term but hopefully one day,