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GreenleafLab / ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
MIT License
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Problems with custom ArchRGenome #551

Closed Jason-bot-stack closed 3 years ago

Jason-bot-stack commented 3 years ago

Helo! The species I studied is pig, there is no BSgenome object, how can I create it? Is ArchR only suitable for species research with BSgenome information?

rcorces commented 3 years ago

Thanks for using ArchR! Please use the issue templates when posting issues and note that this is not a "bug" and would be more properly handled under the "documentation" template

That being said, I do believe there are BSgenome objects for pig. Googling "BSgenome pig" points to: http://www.bioconductor.org/packages/release/data/annotation/html/BSgenome.Sscrofa.UCSC.susScr11.html

Jason-bot-stack commented 3 years ago

Thank you very much!

------------------ 原始邮件 ------------------ 发件人: "GreenleafLab/ArchR" <notifications@github.com>; 发送时间: 2021年2月26日(星期五) 晚上11:06 收件人: "GreenleafLab/ArchR"<ArchR@noreply.github.com>; 抄送: "肖燕园"<1578174865@qq.com>;"Author"<author@noreply.github.com>; 主题: Re: [GreenleafLab/ArchR] Problems with custom ArchRGenome (#551)

Thanks for using ArchR! Please use the issue templates when posting issues and note that this is not a "bug" and would be more properly handled under the "documentation" template

That being said, I do believe there are BSgenome objects for pig. Googling "BSgenome pig" points to: http://www.bioconductor.org/packages/release/data/annotation/html/BSgenome.Sscrofa.UCSC.susScr11.html

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