Closed arugula2388 closed 1 year ago
traceback
Looks like a parallelization issue in preprocessCore
. Could you try to install it manually like in these threads?
https://support.bioconductor.org/p/122925/
https://github.com/Bioconductor/bioconductor_docker/issues/22
Resolved with the above advice; thanks!!
quantile normalization for all region types
dsa_qnorm <- transformCounts(dsa, method="quantile") Last executed at 2023-04-27 10:17:47 in 21ms 2023-04-27 10:17:47 7.9 STATUS STARTED Performing quantile normalization 2023-04-27 10:17:47 7.9 STATUS Region type: promoters_gc_protein_coding Error in preprocessCore::normalize.quantiles(ChrAccR::getCounts(.object, : ERROR; return code from pthread_create() is 22
Traceback: