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GreenleafLab / ChrAccR

Analyzing chromatin accessibility data in R
https://GreenleafLab.github.io/ChrAccR/
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Error in if (!is.element(startStage, dsStages)) logger.error(c("Invalid dataset start stage:", : the condition has length > 1 #19

Closed Chrisdoan9 closed 1 year ago

Chrisdoan9 commented 1 year ago

Hello ChrAccR,

I try to run your vignette but got this error:

run_atac("ChrAccR_analysis", "bamFilenameFull", sampleAnnot, genome="hg38", sampleIdCol="sampleId", regionSets=regionSetList, input = NULL) 2023-08-02 11:48:59 2.6 INFO Analysis directory already exists 2023-08-02 11:48:59 2.6 STATUS STARTED ChrAccR analysis Error in if (!is.element(startStage, dsStages)) logger.error(c("Invalid dataset start stage:", : the condition has length > 1

Would you please have a suggestion? Thank you so much!

demuellae commented 1 year ago

Try deleting the ChrAccR_analysis directory if you want to restart the analysis