GreenleafLab / ChrAccR

Analyzing chromatin accessibility data in R
https://GreenleafLab.github.io/ChrAccR/
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Help with Error in (function (cond) #21

Open Chrisdoan9 opened 1 year ago

Chrisdoan9 commented 1 year ago

Hi Fabian,

I have an error message when run:

run_atac("ChrAccR_analysis", "bamFilenameFull", sampleAnnot, genome="hg38", sampleIdCol="sampleId", regionSets=regionSetList)

Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 'getMatrixSet': there is no package called 'JASPAR2018' In addition: There were 50 or more warnings (use warnings() to see the first 50)

Do I need to install 'JASPAR2018'? I have 'JASPAR2016' and 'JASPAR2022'. Thank you so much!