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GreenleafLab / ChrAccR

Analyzing chromatin accessibility data in R
https://GreenleafLab.github.io/ChrAccR/
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Annotation packages install issue? #4

Closed BenayounLaboratory closed 3 years ago

BenayounLaboratory commented 3 years ago

Hi,

I'm trying to pull the annotation package for mm10 after the program stopped with this message: 

2021-10-14 13:49:41     4.7  STATUS STARTED Plotting TSS enrichment
2021-10-14 13:49:42     4.7 WARNING     Could not find annotation package: ChrAccRAnnotationMm10

However, the function that is there to download it does not seem to work:

getChrAccRAnnotationPackage("mm10")
Error in logger.warning(c("Could not find annotation package:", pkgName)) : 
  could not find function "logger.warning"
In addition: Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘ChrAccRAnnotationMm10’

Any idea what may be going on there? Thanks!

demuellae commented 3 years ago

Sorry for the confusion. That is not the function to download the package. Please install manually using

install.packages("https://muellerf.s3.amazonaws.com/data/ChrAccR/data/annotation/ChrAccRAnnotationMm10_0.0.1.tar.gz")