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GreenleafLab / ChrAccR

Analyzing chromatin accessibility data in R
https://GreenleafLab.github.io/ChrAccR/
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Converting to narrowPeak or BigWig Format #6

Closed astarr1229 closed 1 year ago

astarr1229 commented 2 years ago

Hi,

I was wondering if there was a way to quickly convert from the ChrAccR style datasets to a narrowPeak, bigwig, or bed format so that I can use it in other programs and visualize peaks. Does such a utility function exist? If not, any ideas on how to convert?

Best, Alex.

igunduz commented 1 year ago

Hi,

I don't know if you could find an answer to your question since it's been a while. ChrAccR has _exportCountTracks_function where you can export tracks as a bed or igv format to visualize

Kind regards, Irem