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GreenleafLab / MPAL-Single-Cell-2019

Publication Page for MPAL Paper 2019
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How did you compose those pretty scentific figures ? #15

Open wangmeijiao opened 4 years ago

wangmeijiao commented 4 years ago

Hi,

How did you compose those pretty scentific figures? like the panels f and g in your example figure, which show density tracks of scADT-seq and scRNA-seq. Did you plot them by customized python code or R code? I am starting to learn scentific plotting by python and thirsty for suggestions.

jgranja24 commented 4 years ago

I used ggplot2 violin plots with some color touching. We are releasing a package called ArchR in the next few days with tons of plotting shortcuts that should be nice and helpful.

wangmeijiao commented 4 years ago

Thanks, it certainly will be helpful and I will try the ArchR and hoping to learn some plotting tips.

wangmeijiao commented 4 years ago

It seems that ArchR has been released? https://github.com/GreenleafLab/ArchR

wangmeijiao commented 4 years ago

The mannual of ArchR is well-documented and pratical. Hoping that the last chapter, "Chapter 17 Plot aesthetics in ArchR" will be compeleted in a short time, becasue this will be a rich source for learning of scientific plotting. (: And thanks for all the sharing of codes from the 'GreenleafLab' repository, this is very helpful.