GreenleafLab NucleoATAC issues

GreenleafLab / NucleoATAC

nucleosome calling using ATAC-seq

MIT License

106 stars 31 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Crash in `modelNFR` when correcting subtracted fragment-size distribution (no +ve values after subtraction)

#98 pjbriggs opened 1 day ago
0
pyatac ins output returning all zero values

#97 NatashaJansz opened 3 years ago
0
Python 3 compatibility

#96 AliciaSchep opened 3 years ago
1
Port to Python 3 and pure python

#95 oaxiom closed 3 years ago
4
nucleosome positioning question

#94 juechenyang opened 3 years ago
0
Errors

#93 juechenyang closed 3 years ago
1
Normalization and Differential peaks (Fig 5A, 5D)

#92 monnieb92 opened 4 years ago
1
Question about the use of NucleoATAC.

#91 chesterlee7246 opened 4 years ago
0
Error in installation

#90 pb016 opened 4 years ago
0
maintainence and porting

#89 shouldsee opened 4 years ago
0
Interpreting NucleoATAC Output

#88 StevenWingett opened 5 years ago
0
Interpreting *.nucmap_combined.bed.gz file and downstream analyses

#87 obwan74 opened 5 years ago
0
question about Supplementary Figure 18 in NucleoATAC paper

#86 skye-12138 opened 5 years ago
0
error with module nfr

#85 LuccaZhao closed 5 years ago
2
occ

#84 Baharehh closed 5 years ago
1
Understanding Nucleoatac outputs and Figure 7a from paper

#83 Flope opened 5 years ago
1
list index out of range

#82 michaelwillcockson closed 6 years ago
1
Broad vs narrow peaks for NucleoATAC

#81 mbaddoo closed 6 years ago
4
interpreting occupancy begraph file

#80 mbaddoo closed 6 years ago
2
Pygments versions 0.3.4

#79 freshlearner opened 6 years ago
0
Seperate Chromosome?

#78 hmyh1202 closed 6 years ago
5
nucleoatac occ requires FASTA?

#77 vreuter opened 6 years ago
1
nucleoatac run

#76 hmyh1202 closed 6 years ago
1
how to interpret V-plot

#75 wanluliu opened 6 years ago
2
Cython compilation errors, 'CompileError: command 'gcc' failed with exit status 1\n'

#74 evanbiederstedt opened 6 years ago
4
Python3.x support?

#73 evanbiederstedt closed 6 years ago
5
Narrow/Broad peaks for NucleoATAC

#72 jma1991 closed 6 years ago
2
NucleoATAC ran out of memory

#71 bliu100 opened 6 years ago
0
`nucpos` files are empty

#70 sameet opened 6 years ago
2
biological interpretation of occupancy tracks

#69 bhatis2 closed 6 years ago
1
Interpreting output

#68 pranithavangala closed 6 years ago
1
nucleoatac not running

#67 da-bar opened 6 years ago
0
TypeError: 'int' object has no attribute '__getitem__'

#66 sudarshanchari closed 6 years ago
8
Tag for latest version (v3.4?)

#65 lparsons closed 6 years ago
1
fatal error: 'numpy/arrayobject.h' file not found

#64 kesteph opened 7 years ago
5
are these results sensible?

#63 avilella opened 7 years ago
3
Incorrect Model Fit

#62 mmilevskiy opened 7 years ago
5
Figures 5B, C and D

#61 naiarabediaga closed 7 years ago
3
NFR output of nucleoatac

#60 Flomass closed 7 years ago
4
what's the bedtools slop -b size?

#59 crazyhottommy closed 7 years ago
2
shifting reads bam for NucleoATAC?

#58 crazyhottommy closed 7 years ago
3
RuntimeWarning: invalid value encountered in sqrt

#57 ghost opened 7 years ago
1
Can I run nucleoatac with a consensus peak file?

#56 ghost closed 7 years ago
2
higher resolution nucpos.bed.gz is empty

#55 igordot opened 7 years ago
30
question about occ_track

#54 duyphamuab closed 7 years ago
2
Error compiling Cython file

#53 IanCodes closed 7 years ago
5
RuntimeWarning: overflow encountered in power

#52 mfas7 opened 7 years ago
1
Insertion sites plot around TSS

#51 krouskas closed 7 years ago
3
Requirements

#50 saschi closed 7 years ago
1
BAM file for fragment sizes distribution plot

#49 krouskas closed 7 years ago
1