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Gregor-Mendel-Institute / GWA-Portal

Web-app to store an display GWAS studies
gwas.gmi.oeaw.ac.at
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Remove transformation from phenotypedata REST endpoint #190

Open timeu opened 7 years ago

timeu commented 7 years ago

Instead of transforming the data and directly passing it into PyGWAS, make sure to pass the un-transformed phenotype values and let PyGWAS transform it.

Additionally make sure to pass all phenotype values and not only the ones from the Study so that the transformation is applied to all of them instead of only the overlap. PyGWAS will make sure to calculate the overlap and filter missing genotypes

timeu commented 7 years ago

Blocked by deployment of PyGWAS 1.7.0 on cluster